Biologia plantarum 69:68-76, 2025 | DOI: 10.32615/bp.2025.007
Impact of salinity stress on rice regeneration and molecular defense: insights from IR64 and Cigeulis varieties
- 1 University of Jember, Faculty of Agriculture, Department of Agrotechnology, Jl. Kalimantan 37, 68121, Indonesia
- 2 Costal Agriculture Research Institute, Kyungpook National University, Daegu 41566, Republic of Korea
- 3 Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea
Over the past few decades, rice (Oryza sativa L.) has remained a fundamental staple crop and a primary nutritional energy source for nearly 3.5 billion people worldwide, particularly in Asia. With the global population projected to reach 9.6 billion by 2050, rice production must significantly increase to meet the escalating food demand. However, salinity stress poses a major abiotic challenge that severely hampers plant growth and productivity. Soil salinization, driven by climate change and rising temperatures, leads to an excessive accumulation of salts in the soil (Sári et al., 2023). This phenomenon disrupts plant physiology through water deficit, cytotoxic effects of Na⁺ and Cl⁻ ion accumulation, and nutrient imbalances (Isayenkov and Maathuis, 2019). In coastal regions, salinity stress is further intensified by seawater intrusion into groundwater reserves (Muhardi et al., 2020), while in arid and semi-arid areas, low rainfall limits salt leaching, resulting in excessive salt accumulation (Karolinoerita and Yusuf, 2020). Exposure to salinity stress induces the overproduction of reactive oxygen species (ROS), a group of highly reactive free radicals that can damage essential cellular components, including DNA, proteins, lipids, and pigments, ultimately impairing plant function (Ghosh et al., 2021). To mitigate these detrimental effects, plants activate various adaptive responses (Huong et al., 2020), including the upregulation of antioxidant enzyme systems (Jan et al., 2019), which play a crucial role in ROS scavenging and oxidative stress alleviation. These responses involve both well-developed enzymatic and non-enzymatic scavenging pathways or detoxification systems to counter the destructive effects of ROS that include the enzymes superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), glutathione reductase (GR), and so forth (Hasanuzzaman et al., 2011).
Keywords: antioxidant, callus regeneration, embryogenic, gene expression, salinity stress.
Received: May 1, 2025; Revised: October 10, 2025; Accepted: October 15, 2025; Published online: November 24, 2025 Show citation
| ACS | AIP | APA | ASA | Harvard | Chicago | Chicago Notes | IEEE | ISO690 | MLA | NLM | Turabian | Vancouver |
Supplementary files
| Download file | 7248_Ubaidillah_Suppl.pdf File size: 140.38 kB |
References
- Aazami, M.A., Rasouli, F. & Ebrahimzadeh, A. (2021) Oxidative damage, antioxidant mechanism and gene expression in tomato responding to salinity stress under in vitro conditions and application of iron and zinc oxide nanoparticles on callus induction and plant regeneration. BMC Plant Biology, 21, 597.
Go to original source... - Alhasnawi, A.N., Zain, C.R.C.M., Kadhimi, A.A., Isahak, A., Mohamad, A. & Yusoff, W.M.W. (2017) Accumulation of antioxidants in rice callus (Oryza sativa L.) induced by beta-glucan and salt stress. Australian Journal of Crop Science, 11, 118-125.
Go to original source... - Atabaki, N., Nulit, R., Kalhori, N., Lasumin, N., Sahebi, M. & Abiri, R. (2018) In vitro selection and development of Malaysian salt-tolerant rice (Oryza sativa L. cv. MR263) under salinity. Acta Scientific Agriculture, 2, 8-17.
- Bdr, M.F., Musa, Y., Nasaruddin, Ridwan, I. & Yassi, A. (2020) Screening of Indonesian rice (Oryza sativa L.) genotypes against salinity stress using NaCl under hydroponic conditions. IOP Conference Series: Earth and Environmental Science, 575, 012111.
Go to original source... - Bhandari, U., Gajurel, A., Khadka, B. et al. (2023) Morpho-physiological and biochemical response of rice (Oryza sativa L.) to drought stress: a review. Heliyon, 9, e13744.
Go to original source... - Challagulla, V., Bhattarai, S. & Midmore, D.J. (2015) In-vitro vs in-vivo inoculation: screening for resistance of Australian rice genotypes against blast fungus. Rice Science, 22, 132-137.
Go to original source... - Chen, T., Shabala, S., Niu, Y. et al. (2021) Molecular mechanisms of salinity tolerance in rice. The Crop Journal, 9, 506-520.
Go to original source... - Ghosh, A., Igamberdiev, A.U. & Debnath, S.C. (2021) Tissue culture-induced DNA methylation in crop plants: a review. Molecular Biology Reports, 48, 823-841.
Go to original source... - Guo, H.-H., Wu, J.-F., Chen, C.-X. et al. (2019) Identification and characterization of cell cultures with various embryogenic/regenerative potential in cotton based on morphological, cytochemical, and cytogenetical assessment. Journal of Integrative Agriculture, 18, 1-8.
Go to original source... - Hasanuzzaman, M., Hossain, M.A., Teixeira da Silva, J.A. & Fujita, M. (2011) Plant response and tolerance to abiotic oxidative stress: antioxidant defense is a key factor. In: Venkateswarlu, B., Shanker, A., Shanker, C. & Maheswari, M. (Eds.) Crop Stress and its Management: Perspectives and Strategies. Dordrecht: Springer, pp. 261-315.
Go to original source... - Hasanuzzaman, M., Raihan, M.R.H., Masud, A.A.C. et al. (2021) Regulation of reactive oxygen species and antioxidant defense in plants under salinity. International Journal of Molecular Sciences, 22, 9326.
Go to original source... - Huong, C.T., Anh, T.T.T., Tran, H.-D. et al. (2020) Assessing salinity tolerance in rice mutants by phenotypic evaluation alongside simple sequence repeat analysis. Agriculture, 10, 191.
Go to original source... - Isayenkov, S.V. & Maathuis, F.J.M. (2019) Plant salinity stress: many unanswered questions remain. Frontiers in Plant Science, 10, 80.
Go to original source... - Jan, M., Anwar-ul-Haq, M., Shah, A.N. et al. (2019) Modulation in growth, gas exchange, and antioxidant activities of salt-stressed rice (Oryza sativa L.) genotypes by zinc fertilization. Arabian Journal of Geosciences, 12, 775.
Go to original source... - Jan, R., Khan, M.A., Asaf, S., Lee, I.-J. & Kim, K.-M. (2020) Modulation of sugar and nitrogen in callus induction media alter PAL pathway, SA and biomass accumulation in rice callus. Plant Cell, Tissue and Organ Culture, 143, 517-530.
Go to original source... - Kafisa, S., Mawarni, L. & Rosmayati (2016) [The row spacingsystem on varieties of rice (Oryza sativa L.) in rain fed field.] Jurnal Agroekoteknologi, 4, 2202-2211. [In Indonesian]
- Karolinoerita, V. & Yusuf W.A. (2020) [Land salinization and its problems in Indonesia.] Jurnal Sumberdaya Lahan, 14, 91-99. [In Indonesian]
Go to original source... - Khatri, P. & Joshee, N. (2024) Effect of picloram and desiccation on the somatic embryogenesis of Lycium barbarum L. Plants, 13, 151.
Go to original source... - Khatun, M.M., Ali, M.H. & Desamero, N.V. (2003) Effect of genotype and culture media on callus formation and plant regeneration from mature seed scutella culture in rice. Plant Tissue Culture, 13, 99-107.
- Kim, D.-W., Shibato, J. & Agrawal, G.K. (2007) Gene transcription in the leaves of rice undergoing salt-induced morphological changes (Oryza sativa L.). Molecules and Cells, 24, 45-59.
Go to original source... - Kim, N., Jan, R., Park, J.-R. et al. (2022) QTL mapping and candidate gene analysis for seed germination response to low temperature in rice. International Journal of Molecular Sciences, 23, 7379.
Go to original source... - Kim, Y., Mun, B.-G., Khan, A.L. et al. (2018) Regulation of reactive oxygen and nitrogen species by salicylic acid in rice plants under salinity stress conditions. PLoS ONE, 13, e0192650.
Go to original source... - Lailani, Z.I. & Kuswandi, P.C. (2023) [The effect of BAP addition on callus induction of konjac plants in vitro.] Kingdom (The Journal of Biological Studies), 9, 45-55. [In Indonesian]
Go to original source... - Lesmana, O.S., Toha, H.M., Las, L. & Suprihatno, B. (2004) [Description of new superior rice varieties.] Subang: Balai Penelitian Tanaman Padi Sukamandi, pp. 68. [In Indonesian]
- Lestari, E.G. & Yunita, R. (2008) [Callus induction and shoot regeneration of in vitro rice var. Fatmawati.] Buletin Agronomi, 36, 106-110. [In Indonesian]
- Liu, J., Shabala, S., Shabala, L. et al. (2019) Regulation of Na+ and K+ transporters explains genotypic differences in salinity stress tolerance in rice. Frontiers in Plant Science, 10, 1361.
Go to original source... - Mahaputra, I.K., Susrusa, K.B., Satriawan, I.K. & Widhiantini (2024) System for selecting superior rice varieties and consumption needs in tourism areas of Indonesia: a case study of Bali province. Russian Journal of Agricultural and Socio-Economic Sciences, 8, 156-166.
- Mufadilah, M.A., Thamrin, N., Puspito, A.N. & Ubaidillah, M. (2024) The study of exogenous auxin and cytokinins in embryogenesis and fiber genes expression during in vitro regeneration of cotton (Gossypium hirsutum L.). HAYATI Journal of Biosciences, 31, 517-529.
Go to original source... - Muharam, M. & Saefudin, A. (2016) [The effect of various soil conditioners on the growth and population of Dendang variety rice plants (Oryza sativa L.) in newly opened saline rice fields.] Jurnal Agrotek Indonesia, 1, 141-150. [In Indonesian]
Go to original source... - Muhardi, Faurizal & dan Widodo (2020) [Analysis of the effect of seawater intrusion on groundwater availability in Nusapati Village, Mempawah Regency using the resistivity geophysical method.] Indonesian Journal of Applied Physics, 10, 89-96. [In Indonesian]
- Murugesan, D., Subramanian, G., Salini, A.P., & Muthurajan, R. (2022) Optimization of high frequency plant regeneration protocol via embryogenic callus formation from diverse indica rice genotypes induced by combinations of 2, 4-D and BA. ORYZA - An International Journal on Rice, 59, 281-291.
Go to original source... - Rajput, V.D., Harish, Singh, R.K. et al. (2021) Recent developments in enzymatic antioxidant defence mechanism in plants with special reference to abiotic stress. Biology, 10, 267.
Go to original source... - Rao, M.J., Duan, M., Zhou, C. et al. (2025) Antioxidant defense system in plants: reactive oxygen species production, signaling, and scavenging during abiotic stress-induced oxidative damage. Horticulturae, 11, 477.
Go to original source... - Rismayanti, A.Y. & Nafi'ah, H.H. (2021) [Modification of media in the induction of yellow-fruited Arabica coffee (Coffea arabica L.) callus.] Jurnal Agro Wiralodra, 4, 42-49. [In Indonesian]
Go to original source... - Saharan, V., Yadav, R.C., Yadav, N.R. & Chapagain, B.P. (2004) High frequency plant regeneration from desiccated calli of indica rice (Oryza sativa L.). African Journal of Biotechnology, 3, 256-259.
Go to original source... - Sári, D., Ferroudj, A., Abdalla, N., El-Ramady, H., Dobránszki, J. & Prokisch, J. (2023) Nano-management approaches for salt tolerance in plants under field and in vitro conditions. Agronomy, 13, 2695.
Go to original source... - Sheteiwy, M.S., Shao, H., Qi, W. et al. (2019) GABA-alleviated oxidative injury induced by salinity, osmotic stress and their combination by regulating cellular and molecular signals in rice. International Journal of Molecular Sciences, 20, 5709.
Go to original source... - Takamori, L.M., Neto, N.B.M., Vieira, L.G.E. & Ribas, A.F. (2015) Optimization of somatic embryogenesis and in vitro plant regeneration of Urochloa species using picloram. In Vitro Cellular & Developmental Biology - Plant, 51, 554-563.
Go to original source... - Taratima, W., Chomarsa, T. & Maneerattanarungroj, P. (2022) Salinity stress response of rice (Oryza sativa L. cv. Luem Pua) calli and seedlings. Scientifica, 2022, 5616683.
Go to original source... - Thamodharan, G., Mathankumar, P. & Veeramani, T. (2023) In vitro propagation of Dendranthema × grandiflorum (Ramat.) Kitam. through axillary shoots. Propagation of Ornamental Plants, 23, 71-80.
- Tufail, A., Li, H., Naeem, A., & Li, T.X. (2018) Leaf cell membrane stability-based mechanisms of zinc nutrition in mitigating salinity stress in rice. Plant Biology, 20, 338-345.
Go to original source... - Ubaidillah, M., Farooq, M. & Kim, K.-M. (2024) Enhancing salt tolerance in rice genotypes through exogenous melatonin application by modulating growth patterns and antistress agents. Scientific Reports, 14, 25217.
Go to original source... - Warcho³, M., Skrzypek, E., Kusibab, T. & Dubert, F. (2015) Induction of somatic embryogenesis and biochemical characterization of Cordyline australis (G. Forst.) Endl. 'Red star' callus. Scientia Horticulturae, 192, 338-345.
Go to original source... - Yunita, R., Khumaida, N., Sopandie, D. & Mariska, I. (2014) Growth and regeneration of rice (Oryza sativa L.) callus in salt medium. Bioscience Research, 11, 4-9.



